Donglai Wei

Assistant Professor of Computer Science

Boston College

Office: 245 Beacon St., Rm 528F

Email: donglai.wei [AT] bc.edu

Github / Google Scholar / Hugging Face

My group advances AI4Neuroscience by developing foundation models for large-scale biomedical image analysis and investigating causal mechanisms in complex systems. Our research is generously supported by NSF CAREER Award, NIH R01, and Gates Foundation.

I spent memorable postdoc years at Harvard University, working with Hanspeter Pfister and Jeff Lichtman. I was fortunate to be advised by William Freeman during my Ph.D. at MIT CSAIL. As an undergraduate in Mathematics at Brown University (after transferring from Tsinghua University), I had the privilege to work under Charles Lawrence, Erik Sudderth, Stuart Geman, and See-Chen Ying.

Now Looking For: postdocs, visiting scholars and research interns.

Research Highlights

Geometry-Informed ML: Incorporating geometric priors for better generalization

- Shape Representation: JBHI'25 MedIA'25 MICCAI'23 ISBI'23 CVPR'20 CVPR'19

- Invariance: arXiv'24

Biomedical Benchmarks: Identifying bottlenecks for model development

- Image Registration: Alignment (RnR-ExM)

- Segmentation:

= Low-Res: Blood Vessel (BvEM), Nuclei (NucMM, NucExM, WormID-bench)

= High-Res: Neuron (AxonEM, DenSpineEM), Synapse (WASPSYN, EM-R50), Organelle (MitoEM)

- Medical: General (MedMNIST), Rib (RibSeg, RibFrac), Lung (PTL)

- Packages: BiaPy (Nature Methods'25), PytorchConnectomics (arXiv'21)

Neuroscience Advancement: Extracting insights from visual measurements

- Connectomics: Science'24 Nature Comm.'24 Nature Methods'23

- Spatial Transcriptomics: Nature Comm.'24

- Systems: arXiv'24

Causal Modeling: Analyzing latent temporal structures

- Arrow of Time: CVPR'18 CVPR'14

- Video Dynamics: ICLR'24 ICML'24

Group Members

Postdoc:	Peng Liu
SDE:	Mansour Alawi
Undergrad:	Jason Adhinarta	Michael Lin	Adam Gohain
	Xander Widener
Visitor/Intern:	Bhavika Gopalani

Teaching

CSCI 3388: Generative AI: Mathematics and Applications: F25
CSCI 3383: Algorithms: F23
CSCI 3343: Computer Vision: F22, F21
CSCI 3397: Biomedical Image Analysis. S24, S23, S22

Publications [AI, Dataset, Neuroscience, Causal]

*2025*

	BiaPy: Accessible Deep Learning on Bioimages Daniel Franco-Barranco, Jesuś Andrés-San Román, Ivan Hidalgo-Cenalmor, Lenka Backová, Aitor González-Marfil, Clément Caporal, Anatole Chessel, Pedro Gómez-Gálvez, Luis M. Escudero, Donglai Wei, Arrate Muñoz-Barrutia, Ignacio Arganda-Carreras Nature Methods 2025 [Website (code)]

	TriSAM: Tri-Plane SAM for zero-shot cortical blood vessel segmentation in VEM images Jia Wan, Wanhua Li, Jason Ken Adhinarta, Atmadeep Banerjee, Evelina Sjostedt, Jingpeng Wu, Jeff Lichtman, Hanspeter Pfister, Donglai Wei JBHI 2025 [Website (code)] [Data][MICrONS Integration]

	Efficient Anatomical Labeling of Pulmonary Tree Structures via Deep Point-Graph Representation-based Implicit Fields Kangxian Xie, Jiancheng Yang, Donglai Wei, Ziqiao Weng, Pascal Fua MedIA 2025 [Website (code/data)]

	Deep Rib Fracture Instance Segmentation and Classification from CT on the RibFrac Challenge Jiancheng Yang, Rui Shi, Liang Jin, Xiaoyang Huang, Kaiming Kuang, Donglai Wei, Shixuan Gu, Jianying Liu, Pengfei Liu, Zhizhong Chai, Yongjie Xiao, Hao Chen, Liming Xu, Bang Du, Xiangyi Yan, Hao Tang, Adam Alessio, Gregory Holste, Jiapeng Zhang, Xiaoming Wang, Jianye He, Lixuan Che, Hanspeter Pfister, Ming Li, Bingbing Ni TMI 2025 [Website (code/data)][Challenge]

*2024*

	A Connectomic Study of A Petascale Fragment of Human Cerebral Cortex Alexander Shapson-Coe, Michał Januszewski, Daniel Berger, Art Pope, Yuelong Wu, Tim Blakely, Richard Schalek, Peter Li, Shuohong Wang, Jeremy Martin-Shepard, Neha Karlupia, Sven Dorkenwald, Evelina Sjostedt, Laramie Leavitt, Dongil Lee, Luke Bailey, Angerica Fitzmaurice, Rohin Kar, Benjamin Field, Hank Wu, Julian Wagner-Carena, David Aley, Joanna Lau, Zudi Lin, Donglai Wei, Hanspeter Pfister, Adi Peleg, Viren Jain, Jeff W. Lichtman Science 2024 [Website (code)] [NYT Good Tech Award 2024] [CNN] [Nature News] [Google AI Blog] [MIT Tech Review] [Scientific American]

	Multiplexed Expansion Revealing for Imaging of Multiprotein Nanostructures in Healthy and Diseased Brain Jinyoung Kang, Margaret Schroeder, Youngmi Lee, Chaitanya Kapoor, Eunah Yu, Tyler B. Tarr, Kat Titterton, Menglong Zeng, Demian Park, Emily Niederst, Donglai Wei, Guoping Feng, Edward Boyden Nature Communication 2024 [Code]

	Multiplexed Volumetric CLEM Enabled by scFvs Provides Insights Into the Cytology of Cerebellar Cortex Xiaomeng Han, Xiaotang Lu, Peter Li, Shuohong Wang, Richard Schalek, Yaron Meirovitch, Zudi Lin, Jason Adhinarta, Daniel Berger, Yuelong Wu, Tao Fang, Elif Sevde Meral, Shadnan Asraf, Hidde Ploegh, Hanspeter Pfister, Donglai Wei, Viren Jain, James Trimmer, Jeff Lichtman Nature Communication 2024

	The Time is Ripe to Reverse Engineer an Entire Nervous System: Simulating Behavior from Neural Interactions Gal Haspel, ..., Donglai Wei , ..., Konrad Kording arXiv 2024

	R²-Tuning: Efficient Image-to-Video Transfer Learning for Video Temporal Grounding Ye Liu, Jixuan He, Wanhua Li, Junsik Kim, Donglai Wei, Hanspeter Pfister, Chang Wen Chen ECCV 2024 [Website (code)] [Huggingface demo]

	SocialGPT: Prompting LLMs for Social Relation Reasoning via Greedy Segment Optimization Wanhua Li, Zibin Meng, Jiawei Zhou, Donglai Wei, Chuang Gan, Hanspeter Pfister NeurIPS 2024 [Website (code)]
	Learning Causal Domain-Invariant Temporal Dynamics for Few-Shot Action Recognition Yuke Li, Guangyi Chen, Ben Abramowitz, Stefano Anzellotti, Donglai Wei ICML 2024
	LLCP: Learning Latent Causal Processes for Reasoning-based Video Question Answer Guangyi Chen, Yuke Li, Xiao Liu, Zijian Li, Eman Al Suradi, Donglai Wei, Kun Zhang ICLR 2024 [Website (code)]

	VizAbility: Enhancing Chart Accessibility with LLM-based Conversational Interaction Joshua Gorniak, Yoon Kim, Donglai Wei, Nam Wook Kim UIST 2024

	S³-TTA: Scale-Style Selection for Test-Time Augmentation in Biomedical Image Segmentation Kangxian Xie, Siyu Huang, Sebastian Andres Cajas Ordonez, Hanspeter Pfister, Donglai Wei ISBI 2024 [Website (code)]

	WASPSYN: A Challenge for Domain Adaptive Synapse Detection in Microwasp Brain Connectomes Yicong Li, Wanhua Li, Qi Chen, Wei Huang, Yuda Zou, Xin Xiao, Kazunori Shinomiya, Pat Gunn, Nishika Gupta, Alexey Polilov, Yongchao Xu, Yueyi Zhang, Zhiwei Xiong, Hanspeter Pfister, Donglai Wei, Jingpeng Wu TMI 2024 [Website (code/data)]

	RibSeg v2: A Large-scale Benchmark for Rib Labeling and Anatomical Centerline Extraction Liang Jin, Shixuan Gu, Donglai Wei, Jason Adhinarta, Kaiming Kuang, Yongjie Zhang, Hanspeter Pfister, Bingbing Ni, Jiancheng Yang, Ming Li TMI 2024 [Website (code/data)]

	Two-stage Error Detection to Improve Electron Microscopy Image Mosaicking Hongyu Ge, Jiahao Shi, Shuohong Wang, Donglai Wei, Jiancheng Yang, Ao Cheng, Richard Schalek, Jun Guo, Jeff Lichtman, Lirong Wang, Ruobing Zhang Computers in Biology and Medicine 2024

	BlastAssist: A Deep Learning Pipeline to Measure Interpretable Features of Human Embryos Helen Yang, Brian Leahy, Won-Dong Jang, Donglai Wei, Yael Kalma, Roni Rahav, Ariella Carmon, Rotem Kopel, Foad Azem, Marta Venturas, Colm Kelleher, Liz Cam, Hanspeter Pfister, Daniel Needleman, Dalit Ben-Yosef Human Reproduction 2024

	Ultrasound for assessing paediatric body composition and nutritional status: Scoping review and future directions Bryan Ranger, Allison Lombardi, Susie Kwon, Mary Loeb, Hayoung Cho, Keshi He, Donglai Wei, Jinhee Park Acta Paediatrica 2024

	Real-Time Point of Interest Segmentation for Electron Microscopy Images via Machine Learning Michael Lin, Yousra Nahas, Prokhorenko Sergei, Sujit Das, Ruijuan Xu, Harold Hwang, Ramamoorthy Ramesh, Laurent Bellaiche, David Muller, Yu-Tsun Shao, Donglai Wei Microscopy and Microanalysis 2024

	Learning Gaze-aware Compositional GAN from Limited Annotations Nerea Aranjuelo Ansa, Siyu Huang, Ignacio Arganda-Carreras, Luis Unzueta Irurtia, Oihana Otaegui Madurga, Hanspeter Pfister, Donglai Wei ETRA 2024 [Website (code)]

	Learning Socio-Temporal Graphs for Multi-Agent Trajectory Prediction Yuke Li, Lixiong Chen, Guangyi Chen, Ching-Yao Chan, Kun Zhang, Stefano Anzellotti, Donglai Wei HCMA 2024

*2023*

	Dense 4D nanoscale reconstruction of living brain tissue Philipp Velicky, Eder Miguel, Julia M. Michalska, Donglai Wei, Zudi Lin, Jake F. Watson, Jakob Troidl, Johanna Beyer, Yoav Ben-Simon, Christoph Sommer, Wiebke Jahr, Alban Cenameri, Johannes Broichhagen, Seth G. N. Grant, Peter Jonas, Gaia Novarino, Hanspeter Pfister, Bernd Bickel, Johann G. Danzl Nature Methods 2023 [The Medical News] [Bioengineer.org]

	Immersion fixation and staining of multi-cubic millimeter volumes for electron microscopy-based connectomics of human brain biopsies Neha Karlupia, Richard Schalek, Yuelong Wu, Yaron Meirovitch, Donglai Wei, Alexander Charney, Brian Kopell, Jeff Lichtman Biological Psychiatry 2023 [Visualization]

	A large-scale volumetric correlated light and electron microscopy study localizes Alzheimer's disease-related molecules in the hippocampus Xiaomeng Han, Shuohong Wang, Morgan Sanchez, Sneha Aggarwal, Richard Schalek, Yaron Meirovitch, Zudi Lin, Yuelong Wu, Fatima Aly, Sylvie Bay, Benoît Delatour, Pierre Lafaye, Hanspeter Pfister, Donglai Wei, Hidde Ploegh, Jeff Lichtman bioarxiv 2023

	CLIPTrans: Transferring Visual Knowledge with Pre-trained Models for Multimodal Machine Translation Devaansh Gupta, Siddhant Kharbanda, Jiawei Zhou, Wanhua Li, Hanspeter Pfister, Donglai Wei ICCV 2023 [Website] [Code]

	Vimo: Visual Analysis of Neuronal Connectivity Motifs Jakob Troidl, Simon Warchol, Jinhan Choi, Jordan Matelsky, Nagaraju Dhanyasi, Xueying Wang, Brock Wester, Donglai Wei, Jeff Lichtman, Hanspeter Pfister, Johanna Beyer VIS 2023 (TVCG 2024) [Website (code)]

	VizAbility: Multimodal Accessible Data Visualization with Keyboard Navigation and Conversational Interaction Joshua Gorniak, Jake Ottiger, Donglai Wei, Nam Wook Kim UIST 2023 Adjunct [Poster]

	Domain-Scalable Unpaired Image Translation via Latent Space Anchoring Siyu Huang, Jie An, Donglai Wei, Zudi Lin, Jiebo Luo, Hanspeter Pfister TPAMI 2023 [Code]

	QuantArt: Quantizing Image Style Transfer Towards High Visual Fidelity Siyu Huang, Jie An, Donglai Wei, Jiebo Luo, Hanspeter Pfister CVPR 2023 [Code]

	Why is the winner the best? Matthias Eisenmann, ..., Donglai Wei, ..., Lena Maier-hein CVPR 2023

	Current Progress and Challenges in Large-scale 3D Mitochondria Instance Segmentation Daniel Franco-Barranco, Zudi Lin, Won-Dong Jang, Xueying Wang, Qijia Shen, Wenjie Yin, Yutian Fan, Mingxing Li, Chang Chen, Zhiwei Xiong, Rui Xin, Hao Liu, Huai Chen, Zhili Li, Jie Zhao, Xuejin Chen, Constantin Pape, Ryan Conrad, Luke Nightingale, Joost de Folter, Martin Jones, Yanling Liu, Dorsa Ziaei, Stephan Huschauer, Ignacio Arganda-Carreras, Hanspeter Pfister, Donglai Wei TMI 2023 [Website (code/data)]

	Structure-Preserving Instance Segmentation via Skeleton-Aware Distance Transform Zudi Lin, Donglai Wei, Aarush Gupta, Xingyu Liu, Deqing Sun, Hanspeter Pfister MICCAI 2023 [Oral] [Code][Website (coming soon)]

	High-Throughput Microscopy Image Deblurring with Graph Reasoning Attention Network Yulun Zhang, Donglai Wei, Richard Schalek, Yuelong Wu, Stephen Turney, Jeff Lichtman, Hanspeter Pfister, Yun Fu ISBI 2023 (later: Microscopy and Microanalysis 2023)

	Learning Vector Quantized Shape Code for Amodal Blastomere Instance Segmentation Won-Dong Jang, Donglai Wei, Xingxuan Zhang, Brian Leahy, Helen Yang, James Tompkin, Dalit Ben-Yosef, Daniel Needleman, Hanspeter Pfister ISBI 2023

	Multi-task Curriculum Learning for Partially Labeled Data Won-Dong Jang, Stanislav Lukyanenko, Donglai Wei, Jiancheng Yang, Brian Leahy, Helen Yang, Dalit Ben-Yosef, Daniel Needleman, Hanspeter Pfister ISBI 2023 [Oral]

	3D Domain Adaptive Instance Segmentation Via Cyclic Segmentation GANs Leander Lauenburg, Zudi Lin, Ruihan Zhang, Márcia dos Santos, Siyu Huang, Ignacio Arganda-Carreras, Edward Boyden, Hanspeter Pfister, Donglai Wei JBHI 2023 [Website (code)][Dataset]

	Real-time Image Deblurring to Improve Throughput of Serial-Section Volume Electron Microscopy for Neural Connectomic Studies Richard Schalek, Nandan Parikh, Yuelong Wu, Jeff Lichtman, Yulun Zhang, Donglai Wei Microscopy and Microanalysis 2023


*2022*

	YouMVOS: An Actor-centric Multi-shot Video Object Segmentation Dataset Donglai Wei, Siddhant Kharbanda, Sarthak Arora, Roshan Roy, Nishant Jain, Akash Palrecha, Tanav Shah, Shray Mathur, Ritik Mathur, Abhijay Kemka, Anirudh Chakravarthy, Zudi Lin, Won-Dong Jang, Yansong Tang, Song Bai, James Tompkin, Philip H.S. Torr, Hanspeter Pfister CVPR 2022 [Website (code)]

	Texture-based Error Analysis for Image Super-Resolution Salma Abdel Magid, Zudi Lin, Donglai Wei, Yulun Zhang, Jinjin Gu, Hanspeter Pfister CVPR 2022 [Website (code)]

	Scalable Biologically-Aware Skeleton Generation for Connectomic Volumes Brian Matejek, Tim Franzmeyer, Donglai Wei, Xueying Wang, Jinglin Zhao, Kálmán Palágyi, Jeff W. Lichtman, Hanspeter Pfister TMI 2022 [Website (code/data)]

	UnMICST: Deep Learning with Real Augmentation for Robust Segmentation of Highly Multiplexed Images of Human Tissues Clarence Yapp, Edward Novikov, Won-Dong Jang, Yu-An Chen, Marcelo Cicconet, Zoltan Maliga, Connor A. Jacobson, Donglai Wei, Sandro Santagata, Hanspeter Pfister, Peter K. Sorger Communications Biology 2022

	Edge-Colored Directed Subgraph Enumeration on the Connectome Brian Matejek, Donglai Wei, Tianyi Chen, Charalampos Tsourakakis, Michael Mitzenmacher, Hanspeter Pfister Scientific Reports 2022 [Website (code/data)]

	MedMNIST v2: A Large-Scale Lightweight Benchmark for 2D and 3D Biomedical Image Classification Jiancheng Yang, Rui Shi, Donglai Wei, Zequan Liu, Lin Zhao, Bilian Ke, Hanspeter Pfister, and Bingbing Ni Scientific Data 2022 [Website (code/data)]

*2021*

	Learning to Generate Realistic Noisy Images via Pixel-level Noise-aware Adversarial Training Yuanhao Cai, Xiaowan Hu, Haoqian Wang, Yulun Zhang, Hanspeter Pfister, Donglai Wei NeurIPS 2021 [Website (code)]

	Dynamic High-Pass Filtering and Multi-Spectral Attention for Image Super-Resolution Salma Abdel Magid, Yulun Zhang, Donglai Wei, Won-Dong Jang, Zudi Lin, Yun Fu, Hanspeter Pfister ICCV 2021 [Website (code)]

	Context Reasoning Attention Network for Image Super-Resolution Yulun Zhang, Donglai Wei, Can Qin, Huan Wang, Hanspeter Pfister, Yun Fu ICCV 2021

	AxonEM Dataset: 3D Axon Instance Segmentation of Brain Cortical Regions Donglai Wei, Kisuk Lee, Hanyu Li, Ran Lu, J. Alexander Bae, Zequan Liu, Lifu Zhang, Márcia dos Santos, Zudi Lin, Thomas Uram, Xueying Wang, Ignacio Arganda-Carreras, Brian Matejek, Narayanan Kasthuri, Jeff Lichtman, Hanspeter Pfister MICCAI 2021 [Website (code/data)][Challenge]

	NucMM Dataset: 3D Neuronal Nuclei Instance Segmentation at Sub-Cubic Millimeter Scale Zudi Lin, Donglai Wei, Mariela Petkova, Yuelong Wu, Zergham Ahmed, Krishna Swaroop K, Silin Zou, Nils Wendt, Jonathan Boulanger-Weill, Xueying Wang, Nagaraju Dhanyasi, Ignacio Arganda-Carreras, Florian Engert, Jeff Lichtman, Hanspeter Pfister MICCAI 2021 (Student Travel Award) [Website (code/data)][Challenge]

	RibSeg Dataset and Strong Point Cloud Baselines for Rib Segmentation from CT Scans Jiancheng Yang, Shixuan Gu, Bingbing Ni, Donglai Wei, Hanspeter Pfister MICCAI 2021 [Website (code/data)]

	Developmental Stage Classification of Embryos Using Two-Stream Neural Network with Linear-Chain Conditional Random Field Stanislav Lukyanenko, Won-Dong Jang, Donglai Wei, Robbert Struyven, Yoon Kim, Brian Leahy, Helen Yang, Alexander Rush, Dalit Ben-Yosef, Daniel Needleman, Hanspeter Pfister MICCAI 2021 (nominated but ineligible for Student Travel Award) [Website (code)]

	Consistent Recurrent Neural Networks for 3D Neuron Segmentation Felix Gonda, Donglai Wei, Hanspeter Pfister ISBI 2021 [Code]

	The Wood Image Analysis and Dataset (WIAD): open-access visual analysis tools to advance the ecological data revolution Tim Rademacher, Bijan Seyednasrollah, David Basler, Jian Cheng, Tessa Mandra, Elise Miller, Zudi Lin, David A Orwig, Neil Pederson, Hanspeter Pfister, Andrew D Richardson, Donglai Wei, Li Yao Methods in Ecology and Evolution 2021

*2020*

	Super-BPD: Super Boundary-to-Pixel Direction for Fast Image Segmentation Jianqiang Wan, Yang Liu, Donglai Wei, Xiang Bai, Yongchao Xu CVPR 2020 [Code]

	A Topological Nomenclature for 3D Shape Analysis in Connectomics Abhimanyu Talwar, Zudi Lin, Donglai Wei, Yuesong Wu, Bowen Zheng, Jinglin Zhao, Won-Don Jang, Xueying Wang, Jeff Lichtman, Hanspeter Pfister CVPR 2020 Workshop: Computer Vision for Microscopy Image Analysis [Code]

	Two-Stream Active Query Suggestion for Large-Scale Object Detection in Connectomics Zudi Lin, Donglai Wei, Won-Dong Jang, Siyan Zhou, Xupeng Chen, Xueying Wang, Richard L. Schalek, Daniel R. Berger, Brian Matejek, Lee D. Kamentsky, Adi Peleg, Daniel Haehn, Thouis R. Jones, Toufiq Parag, Jeff Lichtman, Hanspeter Pfister ECCV 2020 [Website (code/data)][Supp]

	MitoEM Dataset: Large-scale 3D Mitochondria Instance Segmentation from EM Images Donglai Wei, Zudi Lin, Daniel Franco-Barranco, Nils Wendt, Xingyu Liu, Wenjie Yin, Xin Huang, Aarush Gupta, Won-Dong Jang, Xueying Wang, Ignacio Arganda-Carreras, Jeff Lichtman, Hanspeter Pfister MICCAI 2020 [Website (code/data)][Challenge]

	Automated Measurement of Key Morphological Features of Human Embryos for IVF Brian Leahy, Won-Dong Jang, Helen Yang, Robbert Struyven, Donglai Wei, Zhe Sun, Kylie R. Lee, Charlotte Royston, Liz Cam, Yael Kalma, Foad Azem, Dalit Ben-Yosef, Hanspeter Pfister, Daniel Needleman MICCAI 2020* [Website (code)]

	Channel Embedding for Informative Protein Identification from Highly Multiplexed Images Salma A. Magid, Won-Dong Jang, Denis Schapiro, Donglai Wei, James Tompkin, Peter Sorger, Hanspeter Pfister MICCAI 2020 [Website (code)]

	Pulse-driven robot: Motion via Solitary Waves Bolei Deng, Liyuan Chen, Donglai Wei, Vincent Tournat, Katia Bertoldi Science Advances 2020

*2019*

	Video Enhancement with Task-Oriented Flow Tianfan Xue, Baian Chen, Jiajun Wu, Donglai Wei, William T. Freeman IJCV 2019 [Website]

	Synapse-Aware Skeleton Generation for Neural Circuits Brian Matejek, Donglai Wei, Xueying Wang, Jinglin Zhao, Kálmán Palágyi, Hanspeter Pfister MICCAI 2019 [Website (code)][Video]

	Biologically-Constrained Graphs for Global Connectomics Reconstruction Brian Matejek, Daniel Haehn, Haidong Zhu, Donglai Wei, Toufiq Parag, Hanspeter Pfister CVPR 2019 [Code)]


*2018*

	Learning and Using the Arrow of Time Donglai Wei, Joseph Lim, Andrew Zisserman, Wlliam T. Freeman CVPR 2018 [Website (code/data)][Extension]

	Parallel Separable 3D Convolution for Video and Volumetric Data Understanding Felix Gonda, Donglai Wei, Toufiq Parag, Hanspeter Pfister BMVC 2018 [Code]

	Detecting Synapse Location and Connectivity by Signed Proximity Estimation and Pruning with Deep Nets Toufiq Parag, Daniel Berger, Lee Kamentsky, Benedikt Staffler, Donglai Wei, Moritz Helmstaedter, Jeff W. Lichtman, Hanspeter Pfister ECCV 2018 Workshop: Bioimage Computing [Code]


*Before 2018*

	Motion Microscopy for Visualizing and Quantifying Small Motions Neal Wadhwa, Justin G. Chen, Jonathan B. Sellon, Donglai Wei, Michael Rubinstein, Roozbeh Ghaffari, Dennis M. Freeman, Oral Büyüköztürk, Pai Wang, Sijie Sun, Sung Hoon Kang, Katia Bertoldi, Fredo Durand, William T. Freeman PNAS 2017 [Website (code)]

	Mining Visual Evolution in 21 Years of Web Design Ali Jahanian, Philip Isola, Donglai Wei CHI Extended Abstracts 2017

	Deviation Magnification: Revealing Departures from Ideal Geometries Neal Wadhwa, Tali Dekel, Donglai Wei, Fredo Durand, William T. Freeman SIGGRAPH Asia 2015 [Website]

	Understanding Intra-Class Knowledge inside CNN Donglai Wei, Bolei Zhou, Antonio Torralba, William T. Freeman arxiv 2015 [Website (code)][distill.pub]

	Seeing the Arrow of Time Lindsey Pickup, Zheng Pan, Donglai Wei, Yichang Shih, Changshui Zhang, Andrew Zisserman, Bernhard Schölkopf, William T. Freeman CVPR 2014 [Website]

	A Data-driven Regularization Model for Stereo and Flow Donglai Wei, Ce Liu, William T. Freeman 3DV 2014 [Oral] [Video]

	Video Representation Using Temporal Superpixels Jason Chang, Donglai Wei, John Fisher III CVPR 2013 [Code][Video]

	Learning Deformations with Parallel Transport Donglai Wei, Dahua Lin, John Fisher III ECCV 2012 [Video]

	RNAG: A New Gibbs Sampler for Predicting RNA Secondary Structure for Unaligned Sequences Donglai Wei, Lauren Alpert and Charles Lawrence Bioinformatics 2011 [Website (code)]

Challenges/Workshops

	MedAGI: Foundation Models for General Medical AI Won-Ki Jeong, Hyunwoo Kim, Yiqing Shen, Zhongying Deng, Edward Choi, Junjun He, Hoon Cho, Donglai Wei, Jin Ye, Jing Ke MICCAI Workshop 2023

	RnR-ExM: Robust Non-rigid Registration Challenge for Expansion Microscopy Volumes Emma Besier, Ruihan Zhang, Yosuke Bando, Yves Quéméner, Chaitanya Kapoor, Mansour Alawi, Malte Hoffmann, Adrian Dalca, Adrià Casamitjana, Ignacio Arganda-Carreras, Ed Boyden, Hanspeter Pfister, Donglai Wei ISBI Challenge 2023 [Computer Vision News]

	An Out-of-Domain Synapse Detection Challenge for Microwasp Brain Connectomes Jingpeng Wu, Yicong Li, Kazunori Shinomiya, Pat Gunn, Alexey Polilov, Hanspeter Pfister, Dmitri Chklovskii, Donglai Wei ISBI Challenge 2023 [Computer Vision News]

	XPRESS: Xray Projectomic Reconstruction (Extracting Segmentation with Skeletons) Mukul Narwani, Mark Larson, Tri Nguyen, Yicong Li, Hanspeter Pfister, Donglai Wei, Nir Shavit, Lu Mi, Alexandra Pacureanu, Wei-Chung Lee, Aaron Kuan ISBI Challenge 2023

	Neuroimage Informatics at the Microscale and Mesoscale Jingpeng Wu, Donglai Wei, Anan Li, Linqing Feng, Shang Mu Research Topics @ Frontiers in Neuroinformatics

	MitoEM Challenge: Large-scale 3D Mitochondria Instance Segmentation Donglai Wei, Zudi Lin, Daniel Franco-Barranco, Wenjie Yin, Won-Dong Jang, Xueying Wang, Ignacio Arganda-Carreras, Jeff Lichtman, Hanspeter Pfister ISBI Challenge 2021

	RibFrac Challenge: Rib Fracture Detection and Classification Jiancheng Yang, Xiaoyang Huang, Kaiming Kuang, Jiajun Chen, Liang Jin, Donglai Wei, Ming Li, Bingbing Ni MICCAI Challenge 2020

Patents

US Patent App. 15/223,438 Neal Wadhwa, Tali Dekel, Donglai Wei, Fredo Durand, William T. Freeman: Deviation Magnification: Revealing Departures from Ideal Geometries.

Short Bio

	Born and grown up in China
	Gradually became lost, ignorant, but arrogant
	Born again

Research Highlights

Group Members

Teaching

Publications [AI, Dataset, Neuroscience, Causal]

Daniel Franco-Barranco, Jesuś Andrés-San Román, Ivan Hidalgo-Cenalmor, Lenka Backová, Aitor González-Marfil, Clément Caporal, Anatole Chessel, Pedro Gómez-Gálvez, Luis M. Escudero, Donglai Wei, Arrate Muñoz-Barrutia, Ignacio Arganda-Carreras Nature Methods 2025 [Website (code)]

Jia Wan, Wanhua Li, Jason Ken Adhinarta, Atmadeep Banerjee, Evelina Sjostedt, Jingpeng Wu, Jeff Lichtman, Hanspeter Pfister, Donglai Wei JBHI 2025 [Website (code)] [Data][MICrONS Integration]

Kangxian Xie, Jiancheng Yang, Donglai Wei, Ziqiao Weng, Pascal Fua MedIA 2025[Website (code/data)]

Jinyoung Kang, Margaret Schroeder, Youngmi Lee, Chaitanya Kapoor, Eunah Yu, Tyler B. Tarr, Kat Titterton, Menglong Zeng, Demian Park, Emily Niederst, Donglai Wei, Guoping Feng, Edward Boyden Nature Communication 2024 [Code]

Xiaomeng Han, Xiaotang Lu, Peter Li, Shuohong Wang, Richard Schalek, Yaron Meirovitch, Zudi Lin, Jason Adhinarta, Daniel Berger, Yuelong Wu, Tao Fang, Elif Sevde Meral, Shadnan Asraf, Hidde Ploegh, Hanspeter Pfister, Donglai Wei, Viren Jain, James Trimmer, Jeff Lichtman Nature Communication 2024

Gal Haspel, ..., Donglai Wei , ..., Konrad Kording arXiv 2024

Ye Liu, Jixuan He, Wanhua Li, Junsik Kim, Donglai Wei, Hanspeter Pfister, Chang Wen Chen ECCV 2024 [Website (code)] [Huggingface demo]

Wanhua Li*, Zibin Meng*, Jiawei Zhou, Donglai Wei, Chuang Gan, Hanspeter Pfister NeurIPS 2024 [Website (code)]

Yuke Li*, Guangyi* Chen, Ben Abramowitz, Stefano Anzellotti, Donglai Wei ICML 2024

Guangyi Chen*, Yuke Li*, Xiao Liu, Zijian Li, Eman Al Suradi, Donglai Wei, Kun Zhang ICLR 2024 [Website (code)]

Joshua Gorniak, Yoon Kim, Donglai Wei, Nam Wook Kim UIST 2024

Kangxian Xie, Siyu Huang, Sebastian Andres Cajas Ordonez, Hanspeter Pfister, Donglai Wei ISBI 2024 [Website (code)]

Yicong Li, Wanhua Li, Qi Chen, Wei Huang, Yuda Zou, Xin Xiao, Kazunori Shinomiya, Pat Gunn, Nishika Gupta, Alexey Polilov, Yongchao Xu, Yueyi Zhang, Zhiwei Xiong, Hanspeter Pfister, Donglai Wei, Jingpeng Wu TMI 2024[Website (code/data)]

Liang Jin, Shixuan Gu, Donglai Wei, Jason Adhinarta, Kaiming Kuang, Yongjie Zhang, Hanspeter Pfister, Bingbing Ni, Jiancheng Yang, Ming Li TMI 2024[Website (code/data)]

Hongyu Ge, Jiahao Shi, Shuohong Wang, Donglai Wei, Jiancheng Yang, Ao Cheng, Richard Schalek, Jun Guo, Jeff Lichtman, Lirong Wang, Ruobing Zhang Computers in Biology and Medicine 2024

Helen Yang, Brian Leahy, Won-Dong Jang, Donglai Wei, Yael Kalma, Roni Rahav, Ariella Carmon, Rotem Kopel, Foad Azem, Marta Venturas, Colm Kelleher, Liz Cam, Hanspeter Pfister, Daniel Needleman, Dalit Ben-Yosef Human Reproduction 2024

Bryan Ranger, Allison Lombardi, Susie Kwon, Mary Loeb, Hayoung Cho, Keshi He, Donglai Wei, Jinhee Park Acta Paediatrica 2024

Michael Lin, Yousra Nahas, Prokhorenko Sergei, Sujit Das, Ruijuan Xu, Harold Hwang, Ramamoorthy Ramesh, Laurent Bellaiche, David Muller, Yu-Tsun Shao, Donglai Wei Microscopy and Microanalysis 2024

Nerea Aranjuelo Ansa, Siyu Huang, Ignacio Arganda-Carreras, Luis Unzueta Irurtia, Oihana Otaegui Madurga, Hanspeter Pfister, Donglai Wei ETRA 2024 [Website (code)]

Yuke Li, Lixiong Chen, Guangyi Chen, Ching-Yao Chan, Kun Zhang, Stefano Anzellotti, Donglai Wei HCMA 2024

Neha Karlupia, Richard Schalek, Yuelong Wu, Yaron Meirovitch, Donglai Wei, Alexander Charney, Brian Kopell, Jeff Lichtman Biological Psychiatry 2023 [Visualization]

Xiaomeng Han, Shuohong Wang, Morgan Sanchez, Sneha Aggarwal, Richard Schalek, Yaron Meirovitch, Zudi Lin, Yuelong Wu, Fatima Aly, Sylvie Bay, Benoît Delatour, Pierre Lafaye, Hanspeter Pfister, Donglai Wei, Hidde Ploegh, Jeff Lichtman bioarxiv 2023

Devaansh Gupta, Siddhant Kharbanda, Jiawei Zhou, Wanhua Li, Hanspeter Pfister, Donglai Wei ICCV 2023 [Website] [Code]

Jakob Troidl, Simon Warchol, Jinhan Choi, Jordan Matelsky, Nagaraju Dhanyasi, Xueying Wang, Brock Wester, Donglai Wei, Jeff Lichtman, Hanspeter Pfister, Johanna Beyer VIS 2023 (TVCG 2024)[Website (code)]

Joshua Gorniak, Jake Ottiger, Donglai Wei, Nam Wook Kim UIST 2023 Adjunct [Poster]

Siyu Huang, Jie An, Donglai Wei, Zudi Lin, Jiebo Luo, Hanspeter Pfister TPAMI 2023[Code]

Siyu Huang, Jie An, Donglai Wei, Jiebo Luo, Hanspeter Pfister CVPR 2023[Code]

Matthias Eisenmann, ..., Donglai Wei, ..., Lena Maier-hein CVPR 2023

Zudi Lin, Donglai Wei, Aarush Gupta, Xingyu Liu, Deqing Sun, Hanspeter Pfister MICCAI 2023 [Oral][Code][Website (coming soon)]

Yulun Zhang, Donglai Wei, Richard Schalek, Yuelong Wu, Stephen Turney, Jeff Lichtman, Hanspeter Pfister, Yun Fu ISBI 2023 (later: Microscopy and Microanalysis 2023)

Won-Dong Jang, Donglai Wei, Xingxuan Zhang, Brian Leahy, Helen Yang, James Tompkin, Dalit Ben-Yosef, Daniel Needleman, Hanspeter Pfister ISBI 2023

Won-Dong Jang, Stanislav Lukyanenko, Donglai Wei, Jiancheng Yang, Brian Leahy, Helen Yang, Dalit Ben-Yosef, Daniel Needleman, Hanspeter Pfister ISBI 2023 [Oral]

Leander Lauenburg, Zudi Lin, Ruihan Zhang, Márcia dos Santos, Siyu Huang, Ignacio Arganda-Carreras, Edward Boyden, Hanspeter Pfister, Donglai Wei JBHI 2023[Website (code)][Dataset]

Richard Schalek, Nandan Parikh, Yuelong Wu, Jeff Lichtman, Yulun Zhang, Donglai Wei Microscopy and Microanalysis 2023

Donglai Wei, Siddhant Kharbanda, Sarthak Arora, Roshan Roy, Nishant Jain, Akash Palrecha, Tanav Shah, Shray Mathur, Ritik Mathur, Abhijay Kemka, Anirudh Chakravarthy, Zudi Lin, Won-Dong Jang, Yansong Tang, Song Bai, James Tompkin, Philip H.S. Torr, Hanspeter Pfister CVPR 2022 [Website (code)]

Salma Abdel Magid, Zudi Lin, Donglai Wei, Yulun Zhang, Jinjin Gu, Hanspeter Pfister CVPR 2022 [Website (code)]

Brian Matejek, Tim Franzmeyer, Donglai Wei, Xueying Wang, Jinglin Zhao, Kálmán Palágyi, Jeff W. Lichtman, Hanspeter Pfister TMI 2022 [Website (code/data)]

Clarence Yapp, Edward Novikov, Won-Dong Jang, Yu-An Chen, Marcelo Cicconet, Zoltan Maliga, Connor A. Jacobson, Donglai Wei, Sandro Santagata, Hanspeter Pfister, Peter K. Sorger Communications Biology 2022

Brian Matejek, Donglai Wei, Tianyi Chen, Charalampos Tsourakakis, Michael Mitzenmacher, Hanspeter Pfister Scientific Reports 2022 [Website (code/data)]

Jiancheng Yang, Rui Shi, Donglai Wei, Zequan Liu, Lin Zhao, Bilian Ke, Hanspeter Pfister, and Bingbing Ni Scientific Data 2022 [Website (code/data)]

Yuanhao Cai, Xiaowan Hu, Haoqian Wang, Yulun Zhang, Hanspeter Pfister, Donglai Wei NeurIPS 2021 [Website (code)]

Salma Abdel Magid, Yulun Zhang, Donglai Wei, Won-Dong Jang, Zudi Lin, Yun Fu, Hanspeter Pfister ICCV 2021 [Website (code)]

Yulun Zhang, Donglai Wei, Can Qin, Huan Wang, Hanspeter Pfister, Yun Fu ICCV 2021

Donglai Wei*, Kisuk Lee*, Hanyu Li, Ran Lu, J. Alexander Bae, Zequan Liu, Lifu Zhang, Márcia dos Santos, Zudi Lin, Thomas Uram, Xueying Wang, Ignacio Arganda-Carreras, Brian Matejek, Narayanan Kasthuri, Jeff Lichtman, Hanspeter Pfister MICCAI 2021[Website (code/data)][Challenge]

Jiancheng Yang, Shixuan Gu, Bingbing Ni, Donglai Wei, Hanspeter Pfister MICCAI 2021[Website (code/data)]

Stanislav Lukyanenko, Won-Dong Jang, Donglai Wei, Robbert Struyven, Yoon Kim, Brian Leahy, Helen Yang, Alexander Rush, Dalit Ben-Yosef, Daniel Needleman, Hanspeter Pfister MICCAI 2021 (nominated but ineligible for Student Travel Award)[Website (code)]

Felix Gonda, Donglai Wei, Hanspeter Pfister ISBI 2021[Code]

Tim Rademacher, Bijan Seyednasrollah, David Basler, Jian Cheng, Tessa Mandra, Elise Miller, Zudi Lin, David A Orwig, Neil Pederson, Hanspeter Pfister, Andrew D Richardson, Donglai Wei, Li Yao Methods in Ecology and Evolution 2021

Jianqiang Wan, Yang Liu, Donglai Wei, Xiang Bai, Yongchao Xu CVPR 2020[Code]

Abhimanyu Talwar, Zudi Lin, Donglai Wei, Yuesong Wu, Bowen Zheng, Jinglin Zhao, Won-Don Jang, Xueying Wang, Jeff Lichtman, Hanspeter Pfister CVPR 2020 Workshop: Computer Vision for Microscopy Image Analysis[Code]

Zudi Lin, Donglai Wei, Won-Dong Jang, Siyan Zhou, Xupeng Chen, Xueying Wang, Richard L. Schalek, Daniel R. Berger, Brian Matejek, Lee D. Kamentsky, Adi Peleg, Daniel Haehn, Thouis R. Jones, Toufiq Parag, Jeff Lichtman, Hanspeter Pfister ECCV 2020[Website (code/data)][Supp]

Donglai Wei, Zudi Lin, Daniel Franco-Barranco, Nils Wendt, Xingyu Liu, Wenjie Yin, Xin Huang, Aarush Gupta, Won-Dong Jang, Xueying Wang, Ignacio Arganda-Carreras, Jeff Lichtman, Hanspeter Pfister MICCAI 2020[Website (code/data)][Challenge]

Brian Leahy*, Won-Dong Jang*, Helen Yang*, Robbert Struyven, Donglai Wei, Zhe Sun, Kylie R. Lee, Charlotte Royston, Liz Cam, Yael Kalma, Foad Azem, Dalit Ben-Yosef, Hanspeter Pfister, Daniel Needleman MICCAI 2020[Website (code)]

Salma A. Magid, Won-Dong Jang, Denis Schapiro, Donglai Wei, James Tompkin, Peter Sorger, Hanspeter Pfister MICCAI 2020[Website (code)]

Bolei Deng, Liyuan Chen, Donglai Wei, Vincent Tournat, Katia Bertoldi Science Advances 2020

Tianfan Xue, Baian Chen, Jiajun Wu, Donglai Wei, William T. Freeman IJCV 2019[Website]

Brian Matejek, Donglai Wei, Xueying Wang, Jinglin Zhao, Kálmán Palágyi, Hanspeter Pfister MICCAI 2019[Website (code)][Video]

Brian Matejek, Daniel Haehn, Haidong Zhu, Donglai Wei, Toufiq Parag, Hanspeter Pfister CVPR 2019[Code)]

Donglai Wei, Joseph Lim, Andrew Zisserman, Wlliam T. Freeman CVPR 2018[Website (code/data)][Extension]

Felix Gonda, Donglai Wei, Toufiq Parag, Hanspeter Pfister BMVC 2018[Code]

Toufiq Parag, Daniel Berger, Lee Kamentsky, Benedikt Staffler, Donglai Wei, Moritz Helmstaedter, Jeff W. Lichtman, Hanspeter Pfister ECCV 2018 Workshop: Bioimage Computing[Code]

Neal Wadhwa, Justin G. Chen, Jonathan B. Sellon, Donglai Wei, Michael Rubinstein, Roozbeh Ghaffari, Dennis M. Freeman, Oral Büyüköztürk, Pai Wang, Sijie Sun, Sung Hoon Kang, Katia Bertoldi, Fredo Durand, William T. Freeman PNAS 2017[Website (code)]

Ali Jahanian, Philip Isola, Donglai Wei CHI Extended Abstracts 2017

Neal Wadhwa, Tali Dekel, Donglai Wei, Fredo Durand, William T. FreemanSIGGRAPH Asia 2015[Website]

Donglai Wei, Bolei Zhou, Antonio Torralba, William T. Freeman arxiv 2015[Website (code)][distill.pub]

Lindsey Pickup, Zheng Pan, Donglai Wei, Yichang Shih, Changshui Zhang, Andrew Zisserman, Bernhard Schölkopf, William T. Freeman CVPR 2014[Website]

Donglai Wei, Ce Liu, William T. Freeman 3DV 2014 [Oral][Video]

Daniel Franco-Barranco, Jesuś Andrés-San Román, Ivan Hidalgo-Cenalmor, Lenka Backová, Aitor González-Marfil, Clément Caporal, Anatole Chessel, Pedro Gómez-Gálvez, Luis M. Escudero, Donglai Wei, Arrate Muñoz-Barrutia, Ignacio Arganda-Carreras
Nature Methods 2025
[Website (code)]

Jia Wan, Wanhua Li, Jason Ken Adhinarta, Atmadeep Banerjee, Evelina Sjostedt, Jingpeng Wu, Jeff Lichtman, Hanspeter Pfister, Donglai Wei
JBHI 2025
[Website (code)] [Data][MICrONS Integration]

Kangxian Xie, Jiancheng Yang, Donglai Wei, Ziqiao Weng, Pascal Fua
MedIA 2025
[Website (code/data)]

Jinyoung Kang, Margaret Schroeder, Youngmi Lee, Chaitanya Kapoor, Eunah Yu, Tyler B. Tarr, Kat Titterton, Menglong Zeng, Demian Park, Emily Niederst, Donglai Wei, Guoping Feng, Edward Boyden
Nature Communication 2024
[Code]

Xiaomeng Han, Xiaotang Lu, Peter Li, Shuohong Wang, Richard Schalek, Yaron Meirovitch, Zudi Lin, Jason Adhinarta, Daniel Berger, Yuelong Wu, Tao Fang, Elif Sevde Meral, Shadnan Asraf, Hidde Ploegh, Hanspeter Pfister, Donglai Wei, Viren Jain, James Trimmer, Jeff Lichtman
Nature Communication 2024

Gal Haspel, ..., Donglai Wei , ..., Konrad Kording
arXiv 2024

Ye Liu, Jixuan He, Wanhua Li, Junsik Kim, Donglai Wei, Hanspeter Pfister, Chang Wen Chen
ECCV 2024
[Website (code)] [Huggingface demo]

Wanhua Li, Zibin Meng, Jiawei Zhou, Donglai Wei, Chuang Gan, Hanspeter Pfister
NeurIPS 2024
[Website (code)]

Yuke Li, Guangyi Chen, Ben Abramowitz, Stefano Anzellotti, Donglai Wei
ICML 2024

Guangyi Chen, Yuke Li, Xiao Liu, Zijian Li, Eman Al Suradi, Donglai Wei, Kun Zhang
ICLR 2024
[Website (code)]

Joshua Gorniak, Yoon Kim, Donglai Wei, Nam Wook Kim
UIST 2024

Kangxian Xie, Siyu Huang, Sebastian Andres Cajas Ordonez, Hanspeter Pfister, Donglai Wei
ISBI 2024
[Website (code)]

Yicong Li, Wanhua Li, Qi Chen, Wei Huang, Yuda Zou, Xin Xiao, Kazunori Shinomiya, Pat Gunn, Nishika Gupta, Alexey Polilov, Yongchao Xu, Yueyi Zhang, Zhiwei Xiong, Hanspeter Pfister, Donglai Wei, Jingpeng Wu
TMI 2024
[Website (code/data)]

Liang Jin, Shixuan Gu, Donglai Wei, Jason Adhinarta, Kaiming Kuang, Yongjie Zhang, Hanspeter Pfister, Bingbing Ni, Jiancheng Yang, Ming Li
TMI 2024
[Website (code/data)]

Hongyu Ge, Jiahao Shi, Shuohong Wang, Donglai Wei, Jiancheng Yang, Ao Cheng, Richard Schalek, Jun Guo, Jeff Lichtman, Lirong Wang, Ruobing Zhang
Computers in Biology and Medicine 2024

Helen Yang, Brian Leahy, Won-Dong Jang, Donglai Wei, Yael Kalma, Roni Rahav, Ariella Carmon, Rotem Kopel, Foad Azem, Marta Venturas, Colm Kelleher, Liz Cam, Hanspeter Pfister, Daniel Needleman, Dalit Ben-Yosef
Human Reproduction 2024

Bryan Ranger, Allison Lombardi, Susie Kwon, Mary Loeb, Hayoung Cho, Keshi He, Donglai Wei, Jinhee Park
Acta Paediatrica 2024

Michael Lin, Yousra Nahas, Prokhorenko Sergei, Sujit Das, Ruijuan Xu, Harold Hwang, Ramamoorthy Ramesh, Laurent Bellaiche, David Muller, Yu-Tsun Shao, Donglai Wei
Microscopy and Microanalysis 2024

Nerea Aranjuelo Ansa, Siyu Huang, Ignacio Arganda-Carreras, Luis Unzueta Irurtia, Oihana Otaegui Madurga, Hanspeter Pfister, Donglai Wei
ETRA 2024
[Website (code)]

Yuke Li, Lixiong Chen, Guangyi Chen, Ching-Yao Chan, Kun Zhang, Stefano Anzellotti, Donglai Wei
HCMA 2024

Neha Karlupia, Richard Schalek, Yuelong Wu, Yaron Meirovitch, Donglai Wei, Alexander Charney, Brian Kopell, Jeff Lichtman
Biological Psychiatry 2023
[Visualization]

Xiaomeng Han, Shuohong Wang, Morgan Sanchez, Sneha Aggarwal, Richard Schalek, Yaron Meirovitch, Zudi Lin, Yuelong Wu, Fatima Aly, Sylvie Bay, Benoît Delatour, Pierre Lafaye, Hanspeter Pfister, Donglai Wei, Hidde Ploegh, Jeff Lichtman
bioarxiv 2023

Devaansh Gupta, Siddhant Kharbanda, Jiawei Zhou, Wanhua Li, Hanspeter Pfister, Donglai Wei
ICCV 2023
[Website] [Code]

Jakob Troidl, Simon Warchol, Jinhan Choi, Jordan Matelsky, Nagaraju Dhanyasi, Xueying Wang, Brock Wester, Donglai Wei, Jeff Lichtman, Hanspeter Pfister, Johanna Beyer
VIS 2023 (TVCG 2024)
[Website (code)]

Joshua Gorniak, Jake Ottiger, Donglai Wei, Nam Wook Kim
UIST 2023 Adjunct
[Poster]

Siyu Huang, Jie An, Donglai Wei, Zudi Lin, Jiebo Luo, Hanspeter Pfister
TPAMI 2023
[Code]

Siyu Huang, Jie An, Donglai Wei, Jiebo Luo, Hanspeter Pfister
CVPR 2023
[Code]

Matthias Eisenmann, ..., Donglai Wei, ..., Lena Maier-hein
CVPR 2023

Zudi Lin, Donglai Wei, Aarush Gupta, Xingyu Liu, Deqing Sun, Hanspeter Pfister
MICCAI 2023 [Oral]
[Code][Website (coming soon)]

Yulun Zhang, Donglai Wei, Richard Schalek, Yuelong Wu, Stephen Turney, Jeff Lichtman, Hanspeter Pfister, Yun Fu
ISBI 2023 (later: Microscopy and Microanalysis 2023)

Won-Dong Jang, Donglai Wei, Xingxuan Zhang, Brian Leahy, Helen Yang, James Tompkin, Dalit Ben-Yosef, Daniel Needleman, Hanspeter Pfister
ISBI 2023

Won-Dong Jang, Stanislav Lukyanenko, Donglai Wei, Jiancheng Yang, Brian Leahy, Helen Yang, Dalit Ben-Yosef, Daniel Needleman, Hanspeter Pfister
ISBI 2023 [Oral]

Leander Lauenburg, Zudi Lin, Ruihan Zhang, Márcia dos Santos, Siyu Huang, Ignacio Arganda-Carreras, Edward Boyden, Hanspeter Pfister, Donglai Wei
JBHI 2023
[Website (code)][Dataset]

Richard Schalek, Nandan Parikh, Yuelong Wu, Jeff Lichtman, Yulun Zhang, Donglai Wei
Microscopy and Microanalysis 2023

Donglai Wei, Siddhant Kharbanda, Sarthak Arora, Roshan Roy, Nishant Jain, Akash Palrecha, Tanav Shah, Shray Mathur, Ritik Mathur, Abhijay Kemka, Anirudh Chakravarthy, Zudi Lin, Won-Dong Jang, Yansong Tang, Song Bai, James Tompkin, Philip H.S. Torr, Hanspeter Pfister
CVPR 2022
[Website (code)]

Salma Abdel Magid, Zudi Lin, Donglai Wei, Yulun Zhang, Jinjin Gu, Hanspeter Pfister
CVPR 2022
[Website (code)]

Brian Matejek, Tim Franzmeyer, Donglai Wei, Xueying Wang, Jinglin Zhao, Kálmán Palágyi, Jeff W. Lichtman, Hanspeter Pfister
TMI 2022
[Website (code/data)]

Clarence Yapp, Edward Novikov, Won-Dong Jang, Yu-An Chen, Marcelo Cicconet, Zoltan Maliga, Connor A. Jacobson, Donglai Wei, Sandro Santagata, Hanspeter Pfister, Peter K. Sorger
Communications Biology 2022

Brian Matejek, Donglai Wei, Tianyi Chen, Charalampos Tsourakakis, Michael Mitzenmacher, Hanspeter Pfister
Scientific Reports 2022
[Website (code/data)]

Jiancheng Yang, Rui Shi, Donglai Wei, Zequan Liu, Lin Zhao, Bilian Ke, Hanspeter Pfister, and Bingbing Ni
Scientific Data 2022
[Website (code/data)]

Yuanhao Cai, Xiaowan Hu, Haoqian Wang, Yulun Zhang, Hanspeter Pfister, Donglai Wei
NeurIPS 2021
[Website (code)]

Salma Abdel Magid, Yulun Zhang, Donglai Wei, Won-Dong Jang, Zudi Lin, Yun Fu, Hanspeter Pfister
ICCV 2021
[Website (code)]

Yulun Zhang, Donglai Wei, Can Qin, Huan Wang, Hanspeter Pfister, Yun Fu
ICCV 2021

Donglai Wei, Kisuk Lee, Hanyu Li, Ran Lu, J. Alexander Bae, Zequan Liu, Lifu Zhang, Márcia dos Santos, Zudi Lin, Thomas Uram, Xueying Wang, Ignacio Arganda-Carreras, Brian Matejek, Narayanan Kasthuri, Jeff Lichtman, Hanspeter Pfister
MICCAI 2021
[Website (code/data)][Challenge]

Jiancheng Yang, Shixuan Gu, Bingbing Ni, Donglai Wei, Hanspeter Pfister
MICCAI 2021
[Website (code/data)]

Stanislav Lukyanenko, Won-Dong Jang, Donglai Wei, Robbert Struyven, Yoon Kim, Brian Leahy, Helen Yang, Alexander Rush, Dalit Ben-Yosef, Daniel Needleman, Hanspeter Pfister
MICCAI 2021 (nominated but ineligible for Student Travel Award)
[Website (code)]

Felix Gonda, Donglai Wei, Hanspeter Pfister
ISBI 2021
[Code]

Tim Rademacher, Bijan Seyednasrollah, David Basler, Jian Cheng, Tessa Mandra, Elise Miller, Zudi Lin, David A Orwig, Neil Pederson, Hanspeter Pfister, Andrew D Richardson, Donglai Wei, Li Yao
Methods in Ecology and Evolution 2021

Jianqiang Wan, Yang Liu, Donglai Wei, Xiang Bai, Yongchao Xu
CVPR 2020
[Code]

Abhimanyu Talwar, Zudi Lin, Donglai Wei, Yuesong Wu, Bowen Zheng, Jinglin Zhao, Won-Don Jang, Xueying Wang, Jeff Lichtman, Hanspeter Pfister
CVPR 2020 Workshop: Computer Vision for Microscopy Image Analysis
[Code]

Zudi Lin, Donglai Wei, Won-Dong Jang, Siyan Zhou, Xupeng Chen, Xueying Wang, Richard L. Schalek, Daniel R. Berger, Brian Matejek, Lee D. Kamentsky, Adi Peleg, Daniel Haehn, Thouis R. Jones, Toufiq Parag, Jeff Lichtman, Hanspeter Pfister
ECCV 2020
[Website (code/data)][Supp]

Donglai Wei, Zudi Lin, Daniel Franco-Barranco, Nils Wendt, Xingyu Liu, Wenjie Yin, Xin Huang, Aarush Gupta, Won-Dong Jang, Xueying Wang, Ignacio Arganda-Carreras, Jeff Lichtman, Hanspeter Pfister
MICCAI 2020
[Website (code/data)][Challenge]

Brian Leahy, Won-Dong Jang, Helen Yang, Robbert Struyven, Donglai Wei, Zhe Sun, Kylie R. Lee, Charlotte Royston, Liz Cam, Yael Kalma, Foad Azem, Dalit Ben-Yosef, Hanspeter Pfister, Daniel Needleman
MICCAI 2020*
[Website (code)]

Salma A. Magid, Won-Dong Jang, Denis Schapiro, Donglai Wei, James Tompkin, Peter Sorger, Hanspeter Pfister
MICCAI 2020
[Website (code)]

Bolei Deng, Liyuan Chen, Donglai Wei, Vincent Tournat, Katia Bertoldi
Science Advances 2020

Tianfan Xue, Baian Chen, Jiajun Wu, Donglai Wei, William T. Freeman
IJCV 2019
[Website]

Brian Matejek, Donglai Wei, Xueying Wang, Jinglin Zhao, Kálmán Palágyi, Hanspeter Pfister
MICCAI 2019
[Website (code)][Video]

Brian Matejek, Daniel Haehn, Haidong Zhu, Donglai Wei, Toufiq Parag, Hanspeter Pfister
CVPR 2019
[Code)]

Donglai Wei, Joseph Lim, Andrew Zisserman, Wlliam T. Freeman
CVPR 2018
[Website (code/data)][Extension]

Felix Gonda, Donglai Wei, Toufiq Parag, Hanspeter Pfister
BMVC 2018
[Code]

Toufiq Parag, Daniel Berger, Lee Kamentsky, Benedikt Staffler, Donglai Wei, Moritz Helmstaedter, Jeff W. Lichtman, Hanspeter Pfister
ECCV 2018 Workshop: Bioimage Computing
[Code]

Neal Wadhwa, Justin G. Chen, Jonathan B. Sellon, Donglai Wei, Michael Rubinstein, Roozbeh Ghaffari, Dennis M. Freeman, Oral Büyüköztürk, Pai Wang, Sijie Sun, Sung Hoon Kang, Katia Bertoldi, Fredo Durand, William T. Freeman
PNAS 2017
[Website (code)]

Ali Jahanian, Philip Isola, Donglai Wei
CHI Extended Abstracts 2017

Neal Wadhwa, Tali Dekel, Donglai Wei, Fredo Durand, William T. Freeman
SIGGRAPH Asia 2015
[Website]

Donglai Wei, Bolei Zhou, Antonio Torralba, William T. Freeman
arxiv 2015
[Website (code)][distill.pub]

Lindsey Pickup, Zheng Pan, Donglai Wei, Yichang Shih, Changshui Zhang, Andrew Zisserman, Bernhard Schölkopf, William T. Freeman
CVPR 2014
[Website]

Donglai Wei, Ce Liu, William T. Freeman
3DV 2014 [Oral]
[Video]